Items where Author is "Dehzangi, Abdollah"

Journal Article

Wardah, Wafaa and Dehzangi, Abdollah and Taherzadeh, G. and Rashid, Mahmood and Khan, Mohammad G.M. and Tsunoda, Tatsuhiko and Sharma, Alokanand (2020) Predicting protein-peptide binding sites with a Deep Convolutional Neural Network. Journal of Theoretical Biology, 110278 . TBC. ISSN 0022-5193

Chandra, Abel and Sharma, Alokanand and Dehzangi, Abdollah and Shigemizu, Daichi and Tsunoda, Tatsuhiko (2019) Bigram - PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix. BMC Molecular and Cell Biology, 20 (57). pp. 1-9. ISSN 2661-8850

Sharma, Alokanand and Lysenko, Artem and Lopez, Yosvany and Dehzangi, Abdollah and Sharma, Ronesh and Reddy, Hamendra M. and Sattar, Abdul and Tsunoda, Tatsuhiko (2019) HseSUMO: Sumoylation site prediction using half - sphere exposures of amino acids residues. BMC Genomics, 19 (9). pp. 1-7. ISSN 1471-2164

Muhammod, Rafsanjani and Ahmed, Sajid and Farid, Dewan M. and Shatabda, Swakkhar and Sharma, Alokanand and Dehzangi, Abdollah (2019) PyFeat: a python - based effective feature generation tool for DNA, RNA, and protein sequences. Bioinformatics, 165 . pp. 1-2. ISSN 1367-4803

Reddy, Hamendra M. and Sharma, Alokanand and Dehzangi, Abdollah and Shigemizu, Daichi and Chandra, Abel and Tsunoda, Tatsuhiko (2019) GlyStruct: glycation prediction using structural properties of amino acid residues. BMC Bioinformatics, 19 (13). pp. 55-64. ISSN 1471-2105

Chandra, Abel and Sharma, Alokanand and Dehzangi, Abdollah and Ranganathan, Shoba and Jokhan, Anjeela D. and Chou, Kuo-Chen and Tsunoda, Tatsuhiko (2018) PhoglyStruct: prediction of phosphoglycerylated lysine residues using structural properties of amino acids. Scientific Reports, 8 (17923). pp. 1-11. ISSN 2045-2322

Dehzangi, Abdollah and Lopez, Yosvany and Taherzadeh, Ghazaleh and Sharma, Alokanand and Tsunoda, Tatsuhiko (2018) SumSec: accurate prediction of Sumoylation sites using predicted secondary structure. Molecules, 23 (12). pp. 1-13. ISSN 1420-3049

Dehzangi, Abdollah and Lopez, Y. and Lal, Sunil and Taherzadeh, G. and Sattar, A. and Tsunoda, T. and Sharma, Alokanand (2018) Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary infomration from profile bigrams. PLoS One, 13 (2). pp. 1-16. ISSN 1932-6203

López, Y. and Sharma, Alokanand and Dehzangi, Abdollah and Lal, Sunil P. and Taherzadeh, G. and Sattar, A. and Tsunoda, T. (2018) Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction. BMC Genomics, 19 . pp. 105-114. ISSN 1471-2164

López, Yosvany and Dehzangi, Abdollah and Lal, Sunil Pranit and Taherzadeh, Ghazaleh and Michaelson, Jacob and Sattar, Abdul and Tsunoda, Tatsuhiko and Sharma, Alokanand (2017) SucStruct: Prediction of succinylated lysine residues by using structural properties of amino acids. Analytical Biochemistry, 527 . 24 - 32. ISSN 0003-2697

Zaman, Rianon and Chowdhury, Shahana Yasmin and Rashid, Mahmood and Sharma, Alokanand and Dehzangi, Abdollah and Shatabda, Swakkhar (2017) HMMBinder: DNA - binding protein prediction using HMM profile based features. BioMed Research International, 2017 . 1 - 10. ISSN 2314-6133

Raicar, Gaurav and Saini, Harsh and Dehzangi, Abdollah and Lal, Sunil P. and Sharma, Alokanand (2016) Improving protein fold recognition and structural class prediction accuracies using physicochemical properties of amino acids. Journal of Theoretical Biology, 402 . pp. 117-128. ISSN 0022-5193

Heffernan, R. and Dehzangi, Abdollah and Lyons, J. and Paliwal, K.K. and Sharma, Alokanand and Wang, J. and Sattar, A. and Zhou, Y. and Yang, Y. (2016) Highly Accurate Sequence-based Prediction of Half-Sphere Exposures of Amino Acid Residues in Proteins. Bioinformatics, 32 (6). pp. 843-849. ISSN 1367-4803

Saini, Harsh and Raicar, Gaurav and Lal, Sunil P. and Dehzangi, Abdollah and Imoto, S. and Sharma, Alokanand (2016) Protein fold recognition using genetic algorithm optimized voting scheme and profile bigram. Journal of Software, 11 (8). pp. 756-767. ISSN 1796-217X

Sharma, Alokanand and Lyons, James and Dehzangi, Abdollah and Paliwal, K.K. (2013) A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition. Journal of Theoretical Biology, 320 . pp. 41-46. ISSN 0022-5193

Sharma, Alokanand and Paliwal, K.K. and Dehzangi, Abdollah and Lyons, James and Imoto, S. and Miyano, S. (2013) A strategy to select suitable physicochemical at attributes of amino acids for protein fold recognition. BMC Bioinformatics, 14 (233). pp. 1-11. ISSN 1471-2105