Items where Author is "Paliwal, K.K."

Book Chapter

Dehzangi, A. and Paliwal, K.K. and Sharma, Alokanand and Lyons, J. and Sattar, A. (2013) Protein fold recognition using an overlapping segmentation approach and a mixture of feature extraction models. In: Lecture Notes in Bioinformatics. Lecture Notes in Computer Science, 8272 . Springer International Publishing, Switzerland, pp. 32-43. ISBN Print 9783319036793 Online 9783319036809

Dehzangi, A. and Paliwal, K.K. and Lyons, J. and Sharma, Alokanand and Sattar, A. (2013) Enhancing protein fold prediction accuracy using evolutionary and structural features. In: Lecture Notes in Computer Science. Lecture Notes in Computer Science, 7986 . Springer Berlin Heidelberg, Switzerland, pp. 196-207. ISBN Print 9783642391583 Online 9783642391590

Dehzangi, A. and Paliwal, K.K. and Lyons, J. and Sharma, Alokanand and Sattar, A. (2013) Exploring potential discriminatory information embedded in PSSM to enhance protein structural class prediction accuracy. In: Lecture Notes in Bioinformatics. Lecture Notes in Computer Science, 7986 . Springer Berlin Heidelberg, Switzerland , pp. 208-219. ISBN Print 9783642391583 Online 9783642391590

Conference Proceedings

Sharma, Alokanand and Sharma, Ronesh and Dehzangi, A. and Lyons, J. and Paliwal, K.K. and Tsunoda, T. (2015) Importance of Dimensionality Reduction in Protein Fold Recognition. [Conference Proceedings]

Saini, Harsh and Raicar, Gaurav and Lal, Sunil P. and Dehzangi, A. and Lyons, J. and Paliwal, K.K. and Imoto, S. and Miyano, S. and Sharma, Alokanand (2014) Genetic algorithm for an optimized weighted voting scheme incorporating k-separated bigram transition probabilities to improve protein fold recognition. [Conference Proceedings]

Journal Article

Lyons, J. and Paliwal, K.K. and Dehzangi, A. and Heffernan, R. and Tsunoda, T. and Sharma, Alokanand (2016) Protein fold recognition using HMM–HMM alignment and dynamic programming. Journal of Theoretical Biology, 393 . pp. 67-74. ISSN 0022-5193

Heffernan, R. and Dehzangi, Abdollah and Lyons, J. and Paliwal, K.K. and Sharma, Alokanand and Wang, J. and Sattar, A. and Zhou, Y. and Yang, Y. (2016) Highly Accurate Sequence-based Prediction of Half-Sphere Exposures of Amino Acid Residues in Proteins. Bioinformatics, 32 (6). pp. 843-849. ISSN 1367-4803

Lyons, J. and Dehzangi, A. and Heffernan, R. and Yang, Yuedong and Zhou, Y. and Sharma, Alokanand and Paliwal, K.K. (2015) Advancing the accuracy of protein fold recognition by utilizing profiles from hidden Markov models. IEEE Transactions on Nanobioscience, 14 (7). pp. 761-772. ISSN 1536-1241

Saini, Harsh and Raicar, Gaurav and Sharma, Alokanand and Lal, Sunil P. and Dehzangi, A. and Lyons, J. and Paliwal, K.K. and Imoto, S. and Miyano, S. (2015) Probabilistic expression of spatially varied amino acid dimers into general form of Chou's pseudo amino acid composition for protein fold recognition. Journal of Theoretical Biology, 380 . pp. 291-298. ISSN 0022-5193

Sharma, Alokanand and Paliwal, K.K. (2015) A deterministic approach to regularized linear discriminant analysis. Neurocomputing, 151 . pp. 207-214. ISSN 0925-2312

Dehzangi, A. and Sohrabi, S. and Heffernan, R. and Sharma, Alokanand and Lyons, J. and Paliwal, K.K. and Sattar, A. (2015) Gram - positive and gram - negative subcellular localization using rotation forest and physicochemical-based features. BMC Bioinformatics, 16 (S1). pp. 1-12. ISSN 1471-2105

Dehzangi, A. and Heffernan, R. and Sharma, Alokanand and Lyons, J. and Paliwal, K.K. and Sattar, A. (2015) Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳ s general PseAAC. Journal of Theoretical Biology, 364 . pp. 284-294. ISSN 0022-5193

Heffernan, R. and Dehzangi, A. and Lyons, J. and Paliwal, K.K. and Sharma, Alokanand and Wang, J. and Sattar, A. and Zhou, Y. and Yang, Y. (2015) Highly accurate sequence - based prediction of half - sphere exposures of amino acid residues in proteins. Bioinformatics, 14 . pp. 1-7. ISSN 1367-4803

Heffernan, R. and Paliwal, K.K. and Lyons, J. and Dehzangi, A. and Sharma, Alokanand and Wang, J. and Sattar, A. and Yang, Y. and Zhou, Y. (2015) Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning. Scientific Reports, 5 (11476). pp. 1-11. ISSN NA

Sharma, Alokanand and Paliwal, K.K. (2015) Linear discriminant analysis for the small sample size problem: an overview. International Journal of Machine Learning and Cybernetics, 6 (3). pp. 443-454. ISSN 1868-8071

Sharma, Ronesh and Dehzangi, A. and Lyons, J. and Paliwal, K.K. and Tsunoda, T. and Sharma, Alokanand (2015) Predict gram - positive and gram - negative subcellular localization via incorporating evolutionary information and physicochemical features into Chou’s general PseAAC. IEEE Transactions on NanoBioscience, 14 (8). pp. 915-926. ISSN 1536-1241

Dehzangi, A. and Sharma, Alokanand and Lyons, J. and Paliwal, K.K. and Sattar, A. (2015) A mixture of physicochemical and evolutionary–based feature extraction approaches for protein fold recognition. International Journal of Data Mining and Bioinformatics, 11 (1). pp. 115-138. ISSN 1748-5673

Paliwal, K.K. and Sharma, Alokanand and Lyons, J. and Dehzangi, A. (2014) Improving protein fold recognition using the amalgamation of evolutionary-based and structural-based information. BMC Bioinformatics, 15 (16). pp. 1-9. ISSN 1471-2105

Dehzangi, A. and Paliwal, K.K. and Lyons, J. and Sharma, Alokanand and Sattar, A. (2014) A segmentation - based method to extract structural and evolutionary features for protein fold recognition. IEEE-ACM Transactions on Computational Biology and Bioinformatics, PP (99). pp. 1-11. ISSN 1557-9964

Sharma, Alokanand and Paliwal, K.K. and Imoto, S. and Miyano, S. (2014) A feature selection method using improved regularized linear discriminant analysis. Machine Vision and Applications, 25 (3). pp. 775-786. ISSN 0932-8092

Paliwal, K.K. and Sharma, Alokanand and Lyons, J. and Dehzangi, A. (2014) A tri - gram based feature extraction technique using linear probabilities of position specific scoring matrix for protein fold recognition. IEEE Transactions on Nanobioscience, 13 (1). pp. 44-50. ISSN 1536-1241

Lyons, S. and Dehzangi, A. and Heffernan, R. and Sharma, Alokanand and Paliwal, K.K. and Sattar, A. and Zhou, Y. and Yang, Y. (2014) Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network. Journal of Computational Chemistry, 35 (28). pp. 2040-2046. ISSN 0192-8651

Dehzangi, A. and Paliwal, K.K. and Lyons, J. and Sharma, Alokanand and Sattar, A. (2014) Proposing a highly accurate protein structural class predictor using segmentation - based features. BMC Genomics, 15 (1). pp. 1-13. ISSN 1471-2164

Lyons, J. and Biswas, S.N. and Sharma, Alokanand and Dehzangi, A. and Paliwal, K.K. (2014) Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping. Journal of Theoretical Biology, 354 . pp. 137-145. ISSN 0022-5193

Saini, Harsh and Raicar, Gaurav and Sharma, Alokanand and Lal, Sunil P. and Dehzangi, A. and Ananthanarayanan, Rajeshkannan and Lyons, J. and Biswas, N. and Paliwal, K.K. (2014) Protein structural class prediction via k - separated bigrams using position specific scoring matrix. Journal of Advanced Computational Intelligence and Intelligent Informatics, 18 (4). pp. 474-479. ISSN 1343-0130

Sharma, Alokanand and Paliwal, K.K. (2013) Linear discriminant analysis for the small sample size problem: an overview. International Journal of Machine Learning and Cybernetics, 5 . pp. 1-12. ISSN 1868-8071

Sharma, Alokanand and Lyons, James and Dehzangi, Abdollah and Paliwal, K.K. (2013) A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition. Journal of Theoretical Biology, 320 . pp. 41-46. ISSN 0022-5193

Dehzangi, A. and Paliwal, K.K. and Sharma, Alokanand and Dehzangi, O. and Sattar, A. (2013) A combination of feature extraction methods with an ensemble of different classifiers for protein structural class prediction problem. IEEE/ACM Transactions on Computational Biology and Bioinformatics, N/A . p. 1. ISSN 1557-9964

Sharma, Alokanand and Paliwal, K.K. and Imoto, S. and Miyano, S. and Sharma, V. and Ananthanarayanan, Rajeshkannan (2013) A feature selection method using fixed-point algorithm for DNA microarray gene expression data. International Journal of Knowledge Based and Intelligent Engineering Systems, 18 (1). pp. 55-59. ISSN 1327-2314

Sharma, Alokanand and Paliwal, K.K. and Imoto, S. and Miyano, S. (2013) A feature selection method using improved regularized linear discriminant analysis. Machine Vision and Applications, Novemb . ?-?. ISSN 0932-8092

Sharma, Alokanand and Paliwal, K.K. and Dehzangi, Abdollah and Lyons, James and Imoto, S. and Miyano, S. (2013) A strategy to select suitable physicochemical at attributes of amino acids for protein fold recognition. BMC Bioinformatics, 14 (233). pp. 1-11. ISSN 1471-2105

Sharma, Alokanand and Paliwal, K.K. (2012) A two-stage linear discriminant analysis for face-recognition. Pattern Recognition Letters, 33 (9). pp. 1157-1162. ISSN 0167-8655

Paliwal, K.K. and Sharma, Alokanand (2012) Improved pseudoinverse linear discriminant analysis method for dimensionality reduction. International Journal of Pattern Recognition and Artificial Intelligence, 26 (1). p. 9. ISSN 0218-0014

Sharma, Alokanand and Paliwal, K.K. and Imoto, S. and Miyano, S. (2012) Principal component analysis using QR decomposition. International Journal of Machine Learning and Cybernetics, 4 (6). pp. 679-683. ISSN 1868-8071

Sharma, Alokanand and Paliwal, K.K. (2012) A gene selection algorithm using Bayesian classification approach. American Journal of Applied Sciences, 9 (1). pp. 127-131. ISSN 1546-9239

Sharma, Alokanand and Paliwal, K.K. (2012) A new perspective to null linear discriminant analysis method and its fast implementation using random matrix multiplication with scatter matrices. Pattern Recognition, 45 (6). pp. 2205-2213. ISSN 0031-3203

Paliwal, K.K. and Sharma, Alokanand (2011) Approximate LDA technique for dimensionality reduction in the small sample size case. Journal of Pattern Recognition Research, 6 (2). pp. 298-306. ISSN 1558-884X

Paliwal, K.K. and Sharma, Alokanand (2010) Improved direct LDA and its application to DNA microarray gene expression data. Pattern Recognition Letters, 31 (16). pp. 2489-2492. ISSN 0167-8655

Sharma, Alokanand and Paliwal, K.K. (2010) Improved nearest centroid classifier with shrunken distance measure for null LDA method on cancer classification problem. Electronics Letters, 46 (18). pp. 1251-1252. ISSN 0013-5194

Sharma, Alokanand and Paliwal, K.K. (2010) Regularisation of eigenfeatures by extrapolation of scatter-matrix in face-recognition problem. Electronics Letters, 46 (10). pp. 682-683. ISSN 0013-5194

Sharma, Alokanand and Paliwal, K.K. (2008) Cancer classification by gradient LDA technique using microarray gene expression data. Data & Knowledge Engineering, 66 (2). pp. 338-347. ISSN 0169-023X

Sharma, Alokanand and Paliwal, K.K. (2008) A gradient linear discriminant analysis for small sample sized problem. Neural Processing Letters, 27 (1). pp. 17-24. ISSN 1370-4621

Sharma, Alokanand and Pujari, A.K. and Paliwal, K.K. (2007) Intrusion detection using text processing techniques with a Kernel based similarity measure. Computers and Security, 26 (7 & 8). pp. 488-495. ISSN 0167-4048

Sharma, Alokanand and Paliwal, K.K. (2007) Fast principal component analysis using fixed-point algorithm. Pattern Recognition Letters, 28 (10). pp. 1151-1155. ISSN 0167-8655

Sharma, Alokanand and Paliwal, K.K. (2007) Detecting masquerades using a combination of Naïve Bayes and weighted RBF approach. Journal in Computer Virology, 3 (3). pp. 237-245. ISSN 1772-9904

Sharma, Alokanand and Paliwal, K.K. and Onwubolu, Godfrey C. (2006) Class-dependent PCA, MDC and LDA: a combined classifier for pattern classification. Pattern Recognition, 39 (7). pp. 1215-1229. ISSN 0031-3203

Sharma, Alokanand and Paliwal, K.K. (2006) Rotational linear discriminant analysis using Bayes Rule for dimensionality reduction. Journal of Computer Science, 2 (9). pp. 754-757. ISSN 1549-3636

Sharma, Alokanand and Paliwal, K.K. (2006) Splitting technique initialization in local PCA. Journal of Computer Science, 2 (1). pp. 53-58. ISSN 1549-3636

Sharma, Alokanand and Paliwal, K.K. (2006) Subspace independent component analysis using vector kurtosis. Pattern Recognition, 39 . pp. 2227-2232. ISSN 0031-3203

Other

Sharma, Alokanand and Paliwal, K.K. (2015) LDA - SSS package: supplement material for "linear discriminant analysis for the small sample size problem: an overview". UNSPECIFIED.